Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015948276.1_cds_XP_016489583.1_80090
CDS Infomation

[gene=LOC107809459] [db_xref=GeneID:107809459] [protein=U-box domain-containing protein 35-like] [protein_id=XP_016489583.1] [location=complement(join(23166..23348,23517..24266,24564..24992,25118..25219,25652..26085,26537..26727,26931..27052,27133..27254,27986..28218,28481..28542))] [gbkey=CDS]
Sequence

ATGCCTGCATTTAACTACATAAGAAGTCCATCACGTATTAAGAGAGCACTAAGTTGGAAA
GAAACTTTCATTACTGAAGAGGAGTGGCAGAGTATGGAGGAGAATGATATATCGAAAACA
GAAGGGCAAGGAACAGTGCAGTCTCCAACATCTTCAGTTGTTGCTATAGCAATCAGTGGG
AACAAGAATAGCAAATATGTGGTGAAATGGGCATTGGACAAATTTGTTCCAGAGGGAGAG
ACACGCTTCATGTTACTACATGTCCGTCCGGAGATCACTGCAGTTCCAACTCCTATGGGA
AACTTGATTCCTATTGCACAAGTAAGAGAGGATGTAGCAGATGCCTTCAGGAAGGAAGTC
GAGTTGCAAGCAAGTGAAAAGCTTCTTCCTTACAAGACGATGTTTATTAGGAGAAAGGTG
CAAGTAGGAGTTGTTCAAATTGAATCAAATGATGTTGTAAATGCAATAGCAGGGGTGGTA
TCTAAATGTTCTATCAACAAGCTTGTCATTGGAACCTCAACCCCTGGCCTATTTTCAAGG
GGAAGAAACTTATCTGCAAGTATCTCAGAAACTGCTCCAACCTTTTGCACAGTTTATGCT
GTGTCAAAGGGAAAACTGTCGTCAGTGCGTCCATCGAGTTATGAAAACAATGGAGCTGTT
ATAGATGATAGCAGTGATACAAGTAGTTCTTCCAACAATTCTACAGGCCAAAGTTTTAGC
TCACAAGGAGAGAGGACGGATCACAGCTCAACTTCACCTGCTTCATACTCTCATTTGTAT
TCTCCTACTCGTAAATTGCAACGCTATCAATCAAAATCCCCAACACACCATGCCCTGCAG
ACACTTCTCCATAAAAGAACAAATATTGGTGAAACCATCCAATCTAGAACTTCATCTATC
GACATTGGAGAAGCATTTCAAGCCCTCTCAATTAAAAACAATACTAAAAGAGCAAATCTG
AATGAAGTCATCCATCCTAGAGCTATGACTATTGCTACCGGAGAAGCTGAGGATGACAAA
AGTTGCTATTTCAGTAGCTCAGGAATTACTGATCCAAATAGTCTTAATTCAAGTTTCAAG
AAAGCAAAATTAGACAATCAACAATGGTCTACAAGTCAGTCTTCCAACTCAGATGCTCCA
ACAGATTCTTCATCTGGAAGTCAGGTTAACATCAATTATGACCTAGAAAAACTGAGAATT
GAGCTCAAACATATTCAAGGAATGTATGCAATAGCTCAAACTGAGGCAATAGATGCTTCT
CGGAAGCTGAATGAATTTCAGAAGCTTCGAGTGGATGAAGCGAATAAGCTGATGGAGATA
AACCTTAAGGAGGAGGAAGCCAAAGAATTTGCAGAACAAGAGAAGTTAAAATGTGAAGCA
GCAAAGAAGGAAGCTGACTATGCAATGGAATGTGCTGAAAGAGAAGTTGAGAAAAGAAGA
GCAGCAGAAAGCATTGCAAACCGGGAGGCTAGAGCTAAAGAAAAGCTTGAGAAATCATTA
ATACTACCTCTCCATCACTACCAGAAATTCACGTGGGAAGAGATCATGACGGCTAGCGCA
TCTTTCTCTGAGGATCTTAAGATAGGAATGGGATCATATGGAATGGTTTACAAGTGCTAT
TTGCATCATACAACTGCAGCAGTGAAAGTTCTTCATTCCACCGAGGCTCATAGAACTAAG
CAATTTCAACAAGAGCTTGAAATATTGAGCACAATTCATCACCCTCACTTGTTAATTCTA
CTTGGCGCATGCCCTGAACGCGGTTGCCTAGTATACGAGTACATGGAGAATGGAAGTTTG
GAGGATAGGTTGATAAGGAAAAACAAAACACCGCCACTTGCATGGTTTGACAGGGTTCGG
ATAGCTTGGGAAGTTGCTTCTGCTCTTGTTTTCCTTCATTACACGAAGCCAAAACCGATC
ATACACCGTGATTTAAAGCCAGCTAACATACTGCTTGATCATAACTTGGTGAGCAAAATA
GGAGATGTTGGACTTTCAACAATGGTTCACTCAGACTCTTCCTCAGCAATGACGGCATAC
AAAGACACGAGTCCAGTTGGCACACTTTGCTATATAGATCCTGAGTATCAAAGGACAGGA
TTAGTCTCTACAAAATCTGATGTTTATGCTTTTGGAATGGTCATTCTGCAGTTGCTTACT
GCGAAACGTGCCATAGCTTTAGCCCATATGGTAGAAATGGCAATCGAAGACAATAACTTA
GTGGAGTTGCTGGATCAAGAAGCCGGTGAATGGCCTATTGAAGAGACAAAGGAATTGGCT
GTGCTTGCTATAAAATGCACTGAGCTTCGACGTAGAGACAGACCTGACTTGAAAGATGAA
GTTCTCCCTGCTTTAGAGAGATTGAAAGAAGTCGCTGATAGAGCTCGAGATTTGATATAT
ATCCTATCTCCATCTCCTAGCCACTTCAAATGCCCCATACTCAAGGAAGTGATGCATGAC
CCTTGTGTTGCGGCTGATGGATACACTTATGACCGGAAGGCAATAGAGTCATGGCTAAAG
GACAACGATCATTCACCAGTGACGAATTCACCATTACCACATAAACAACTGCTGGCAAAT
TACACACTTCTCTCTGCTATCAAAGAATGGAAGTCAGGGAAACATTGA

Peptide Sequence

PEP ID

XP_016489583.1
PEP Infomation

PREDICTED: U-box domain-containing protein 35-like [Nicotiana tabacum]
Sequence

MPAFNYIRSPSRIKRALSWKETFITEEEWQSMEENDISKTEGQGTVQSPTSSVVAIAISG
NKNSKYVVKWALDKFVPEGETRFMLLHVRPEITAVPTPMGNLIPIAQVREDVADAFRKEV
ELQASEKLLPYKTMFIRRKVQVGVVQIESNDVVNAIAGVVSKCSINKLVIGTSTPGLFSR
GRNLSASISETAPTFCTVYAVSKGKLSSVRPSSYENNGAVIDDSSDTSSSSNNSTGQSFS
SQGERTDHSSTSPASYSHLYSPTRKLQRYQSKSPTHHALQTLLHKRTNIGETIQSRTSSI
DIGEAFQALSIKNNTKRANLNEVIHPRAMTIATGEAEDDKSCYFSSSGITDPNSLNSSFK
KAKLDNQQWSTSQSSNSDAPTDSSSGSQVNINYDLEKLRIELKHIQGMYAIAQTEAIDAS
RKLNEFQKLRVDEANKLMEINLKEEEAKEFAEQEKLKCEAAKKEADYAMECAEREVEKRR
AAESIANREARAKEKLEKSLILPLHHYQKFTWEEIMTASASFSEDLKIGMGSYGMVYKCY
LHHTTAAVKVLHSTEAHRTKQFQQELEILSTIHHPHLLILLGACPERGCLVYEYMENGSL
EDRLIRKNKTPPLAWFDRVRIAWEVASALVFLHYTKPKPIIHRDLKPANILLDHNLVSKI
GDVGLSTMVHSDSSSAMTAYKDTSPVGTLCYIDPEYQRTGLVSTKSDVYAFGMVILQLLT
AKRAIALAHMVEMAIEDNNLVELLDQEAGEWPIEETKELAVLAIKCTELRRRDRPDLKDE
VLPALERLKEVADRARDLIYILSPSPSHFKCPILKEVMHDPCVAADGYTYDRKAIESWLK
DNDHSPVTNSPLPHKQLLANYTLLSAIKEWKSGKH

Transcript Sequence

Gene sequence data has not been registered.